Preliminary analyses of perch growth

library(tidyverse)
library(tidylog)
library(brms)
library(tidybayes)
library(modelr)
library(viridis)
library(purrr)
library(ggsidekick)
theme_set(theme_sleek())

# For parallel processing
options(mc.cores = parallel::detectCores()) 

# Continuous colors
options(ggplot2.continuous.colour = "viridis")

# Discrete colors
scale_colour_discrete <- function(...) {
  scale_colour_brewer(palette = "Paired")
}

scale_fill_discrete <- function(...) {
  scale_fill_brewer(palette = "Paired")
}

Read and filter back-calculated length data

d <- readr::read_csv("data/for_analysis/dat.csv") %>%
  select(-...1) %>% 
  mutate(length_cm = length_mm / 10)

# qwraps2::lazyload_cache_dir(path = "R/03b_preliminary_analysis_cache/html")

Plot data

ggplot(d, aes(age_bc, length_cm, color = cohort)) +
  geom_point(size = 1/2, alpha = 1/4) + 
  facet_wrap(~area)

# Filter cohorts with minimum 5 IDs per cohort
d <- d %>% 
  group_by(cohort, area) %>% 
  mutate(n_id = length(unique(ID))) %>% 
  filter(n_id >= 10) %>% 
  ungroup()
#> group_by: 2 grouping variables (cohort, area)
#> mutate (grouped): new variable 'n_id' (integer) with 298 unique values and 0% NA
#> filter (grouped): removed 1,404 rows (<1%), 363,142 rows remaining
#> ungroup: no grouping variables

Fit von Bertalanffy brms models for each cohort with parameters varying among individuals for each area

First run some prior predictive checks to make sure priors are reasonable

hist(rnorm(100000, mean = 40, sd = 20))

hist(rnorm(100000, mean = -0.5, sd = 1))

hist(rnorm(100000, mean = 0.2, sd = 1)) 

m0 <- brm(
  bf(length_cm ~ Linf*(1-exp(-K*(age_bc-t0))),
     Linf ~ 1, t0 ~ 1, K ~ 1, nl = TRUE),
  data = d, family = gaussian(),
  prior = c(prior(normal(45, 20), nlpar = "Linf"),
            prior(normal(-0.5, 1), nlpar = "t0"),
            prior(normal(0.2, 0.1), nlpar = "K")),
            sample_prior = "only", 
  iter = 4000, thin = 1, cores = 3, chains = 3, seed = 9)
#> Compiling Stan program...
#> Start sampling

pp <- conditional_effects(m0, method = "posterior_predict")

plot(pp, plot = FALSE)[[1]] +
  labs(x = "Age [yrs]", y = "length [cm]") +
  geom_point(data = d, aes(age_bc, length_cm), inherit.aes = FALSE)

# 
# # Global model
# p1 <- ggplot(d, aes(age_bc, length_cm)) + 
#   geom_jitter(height = 0, width = 0.5, alpha = 0.2, shape = 21, fill = "black", color = "white") + 
#   coord_cartesian(expand = 0, ylim = c(0, 55), xlim = c(0, 18))

# Sub sample for faster fitting...
# d_sub <- sample_n(d, 5000)
# 
# p2 <- ggplot(d_sub, aes(age_bc, length_cm)) + 
#   geom_jitter(height = 0, width = 0.5, alpha = 0.2, shape = 21, fill = "black", color = "white") +
#   coord_cartesian(expand = 0, ylim = c(0, 55), xlim = c(0, 18))
# 
# p1 / p2
# 
# m1 <- brm(
#   bf(length_cm ~ Linf*(1-exp(-K*(age_bc-t0))),
#      Linf ~ 1, t0 ~ 1, K ~ 1, nl = TRUE),
#   data = d_sub, family = student(),
#   prior = c(prior(normal(40, 20), nlpar = "Linf"),
#             prior(normal(-0.5, 0.5), nlpar = "t0"),
#             prior(normal(0.2, 0.1), nlpar = "K")),
#   iter = 3000, thin = 1, cores = 3, chains = 3)
# 
# summary(m1)
# 
# rhat(m1)
# 
# plot(m1)
# 
# pp <- conditional_effects(m1, method = "posterior_predict")
# 
# plot(pp, plot = FALSE)[[1]] +
#   labs(x = "Age [yrs]", y = "length [cm]") +
#   geom_point(data = d_sub, aes(age_bc, length_cm), inherit.aes = FALSE)

Test a cohort-specific vbge model to the area with least years to start with

d %>%
  group_by(area) %>%
  summarise(n_cohorts = length(unique(cohort))) %>%
  arrange(n_cohorts)
#> group_by: one grouping variable (area)
#> summarise: now 12 rows and 2 columns, ungrouped

d_vin <- d %>% filter(area == "VN")
#> filter: removed 352,404 rows (97%), 10,738 rows remaining

# Plot VN area
ggplot(d_vin, aes(age_bc, length_cm, color = ID)) +
  geom_point(size = 1/2, alpha = 1/4) + 
  facet_wrap(~cohort) + 
  guides(color = "none") + 
  scale_color_viridis(discrete = TRUE)

# Fit model with parameters varying by ID. First filter a single year to test speed
start_time <- Sys.time()
mtest <- 
  brm(
    bf(length_cm ~ Linf*(1-exp(-K*(age_bc-t0))),
       t0 ~ 1 + (1|ID),
       K ~ 1 + (1|ID),  
       Linf ~ 1 + (1|ID),
       nl = TRUE), 
    data = filter(d_vin, cohort == 1995),
    family = gaussian(),
    prior = c(prior(normal(45, 20), nlpar = "Linf"),
              prior(normal(0.5, 1), nlpar = "t0"),
              prior(normal(0.2, 0.1), nlpar = "K")),
    iter = 4000,
    thin = 1,
    cores = 3,
    chains = 3,
    seed = 9)
#> filter: removed 9,800 rows (91%), 938 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
Sys.time() - start_time
#> Time difference of 8.641417 mins
  
rhat(mtest)
#>                    b_t0_Intercept                     b_K_Intercept 
#>                         1.0001327                         1.0002526 
#>                  b_Linf_Intercept               sd_ID__t0_Intercept 
#>                         1.0001181                         1.0007497 
#>                sd_ID__K_Intercept             sd_ID__Linf_Intercept 
#>                         1.0148756                         1.0007793 
#>                             sigma   r_ID__t0[1996_246_VN,Intercept] 
#>                         1.0005787                         0.9999792 
#>   r_ID__t0[1997_102_VN,Intercept]   r_ID__t0[1997_105_VN,Intercept] 
#>                         1.0000238                         1.0000997 
#>   r_ID__t0[1997_106_VN,Intercept]   r_ID__t0[1997_107_VN,Intercept] 
#>                         0.9997177                         0.9997777 
#>   r_ID__t0[1997_108_VN,Intercept]   r_ID__t0[1997_109_VN,Intercept] 
#>                         0.9996247                         0.9996072 
#>    r_ID__t0[1997_11_VN,Intercept]   r_ID__t0[1997_110_VN,Intercept] 
#>                         0.9998074                         1.0006909 
#>   r_ID__t0[1997_113_VN,Intercept]   r_ID__t0[1997_115_VN,Intercept] 
#>                         0.9998463                         0.9996394 
#>    r_ID__t0[1997_12_VN,Intercept]    r_ID__t0[1997_13_VN,Intercept] 
#>                         0.9998311                         0.9996200 
#>    r_ID__t0[1997_14_VN,Intercept]    r_ID__t0[1997_15_VN,Intercept] 
#>                         0.9998524                         1.0002598 
#>   r_ID__t0[1997_151_VN,Intercept]   r_ID__t0[1997_152_VN,Intercept] 
#>                         1.0001044                         0.9998308 
#>   r_ID__t0[1997_153_VN,Intercept]   r_ID__t0[1997_156_VN,Intercept] 
#>                         1.0000606                         0.9998750 
#>   r_ID__t0[1997_157_VN,Intercept]   r_ID__t0[1997_159_VN,Intercept] 
#>                         1.0001748                         0.9998840 
#>   r_ID__t0[1997_160_VN,Intercept]   r_ID__t0[1997_162_VN,Intercept] 
#>                         0.9995350                         0.9997479 
#>    r_ID__t0[1997_17_VN,Intercept]    r_ID__t0[1997_18_VN,Intercept] 
#>                         0.9997359                         0.9995329 
#>   r_ID__t0[1997_189_VN,Intercept]    r_ID__t0[1997_19_VN,Intercept] 
#>                         1.0001025                         0.9998749 
#>   r_ID__t0[1997_190_VN,Intercept]   r_ID__t0[1997_192_VN,Intercept] 
#>                         0.9997635                         0.9999726 
#>   r_ID__t0[1997_193_VN,Intercept]   r_ID__t0[1997_195_VN,Intercept] 
#>                         1.0002050                         0.9999054 
#>   r_ID__t0[1997_199_VN,Intercept]    r_ID__t0[1997_20_VN,Intercept] 
#>                         0.9998029                         0.9997970 
#>   r_ID__t0[1997_201_VN,Intercept]    r_ID__t0[1997_21_VN,Intercept] 
#>                         0.9997989                         1.0001056 
#>   r_ID__t0[1997_211_VN,Intercept]   r_ID__t0[1997_212_VN,Intercept] 
#>                         0.9998184                         0.9997609 
#>   r_ID__t0[1997_213_VN,Intercept]   r_ID__t0[1997_217_VN,Intercept] 
#>                         1.0003063                         0.9997863 
#>   r_ID__t0[1997_218_VN,Intercept]   r_ID__t0[1997_219_VN,Intercept] 
#>                         0.9999291                         1.0002079 
#>   r_ID__t0[1997_220_VN,Intercept]   r_ID__t0[1997_222_VN,Intercept] 
#>                         1.0005136                         0.9998404 
#>   r_ID__t0[1997_223_VN,Intercept]   r_ID__t0[1997_226_VN,Intercept] 
#>                         1.0003571                         0.9997255 
#>   r_ID__t0[1997_227_VN,Intercept]   r_ID__t0[1997_229_VN,Intercept] 
#>                         0.9997597                         1.0006333 
#>    r_ID__t0[1997_23_VN,Intercept]   r_ID__t0[1997_230_VN,Intercept] 
#>                         0.9997934                         0.9997155 
#>   r_ID__t0[1997_235_VN,Intercept]   r_ID__t0[1997_236_VN,Intercept] 
#>                         0.9999956                         0.9996559 
#>   r_ID__t0[1997_240_VN,Intercept]   r_ID__t0[1997_241_VN,Intercept] 
#>                         1.0002541                         0.9998921 
#>   r_ID__t0[1997_244_VN,Intercept]   r_ID__t0[1997_248_VN,Intercept] 
#>                         0.9996930                         0.9999447 
#>   r_ID__t0[1997_250_VN,Intercept]   r_ID__t0[1997_252_VN,Intercept] 
#>                         0.9998795                         0.9996383 
#>   r_ID__t0[1997_253_VN,Intercept]   r_ID__t0[1997_254_VN,Intercept] 
#>                         0.9999164                         0.9995759 
#>   r_ID__t0[1997_256_VN,Intercept]   r_ID__t0[1997_257_VN,Intercept] 
#>                         0.9996287                         0.9997100 
#>   r_ID__t0[1997_258_VN,Intercept]   r_ID__t0[1997_263_VN,Intercept] 
#>                         0.9997546                         0.9997915 
#>   r_ID__t0[1997_268_VN,Intercept]   r_ID__t0[1997_270_VN,Intercept] 
#>                         0.9999677                         0.9998390 
#>   r_ID__t0[1997_271_VN,Intercept]   r_ID__t0[1998_102_VN,Intercept] 
#>                         1.0001919                         1.0001179 
#>   r_ID__t0[1998_103_VN,Intercept]    r_ID__t0[1998_11_VN,Intercept] 
#>                         1.0002532                         0.9995579 
#>   r_ID__t0[1998_110_VN,Intercept]   r_ID__t0[1998_111_VN,Intercept] 
#>                         1.0001786                         0.9998030 
#>    r_ID__t0[1998_12_VN,Intercept]   r_ID__t0[1998_121_VN,Intercept] 
#>                         0.9999119                         0.9995252 
#>   r_ID__t0[1998_122_VN,Intercept]   r_ID__t0[1998_123_VN,Intercept] 
#>                         1.0004306                         0.9998765 
#>   r_ID__t0[1998_124_VN,Intercept]   r_ID__t0[1998_125_VN,Intercept] 
#>                         0.9997801                         0.9999055 
#>   r_ID__t0[1998_127_VN,Intercept]   r_ID__t0[1998_128_VN,Intercept] 
#>                         1.0004825                         0.9995907 
#>   r_ID__t0[1998_129_VN,Intercept]    r_ID__t0[1998_13_VN,Intercept] 
#>                         0.9999933                         0.9998804 
#>   r_ID__t0[1998_138_VN,Intercept]    r_ID__t0[1998_14_VN,Intercept] 
#>                         0.9995762                         1.0005225 
#>   r_ID__t0[1998_140_VN,Intercept]   r_ID__t0[1998_143_VN,Intercept] 
#>                         0.9997871                         0.9996229 
#>   r_ID__t0[1998_145_VN,Intercept]   r_ID__t0[1998_146_VN,Intercept] 
#>                         1.0000988                         0.9995714 
#>   r_ID__t0[1998_148_VN,Intercept]   r_ID__t0[1998_149_VN,Intercept] 
#>                         0.9998828                         1.0007830 
#>   r_ID__t0[1998_155_VN,Intercept]    r_ID__t0[1998_17_VN,Intercept] 
#>                         0.9998128                         1.0003273 
#>   r_ID__t0[1998_273_VN,Intercept]   r_ID__t0[1998_285_VN,Intercept] 
#>                         0.9999381                         1.0000081 
#>   r_ID__t0[1998_288_VN,Intercept]   r_ID__t0[1998_289_VN,Intercept] 
#>                         1.0002351                         0.9998218 
#>    r_ID__t0[1998_29_VN,Intercept]   r_ID__t0[1998_290_VN,Intercept] 
#>                         0.9996038                         0.9995739 
#>   r_ID__t0[1998_291_VN,Intercept]   r_ID__t0[1998_292_VN,Intercept] 
#>                         0.9995544                         0.9996374 
#>   r_ID__t0[1998_295_VN,Intercept]     r_ID__t0[1998_3_VN,Intercept] 
#>                         0.9999513                         0.9997984 
#>    r_ID__t0[1998_30_VN,Intercept]   r_ID__t0[1998_303_VN,Intercept] 
#>                         0.9995570                         0.9996685 
#>   r_ID__t0[1998_304_VN,Intercept]   r_ID__t0[1998_305_VN,Intercept] 
#>                         0.9996181                         1.0001049 
#>   r_ID__t0[1998_306_VN,Intercept]    r_ID__t0[1998_31_VN,Intercept] 
#>                         1.0001960                         1.0000714 
#>   r_ID__t0[1998_315_VN,Intercept]    r_ID__t0[1998_32_VN,Intercept] 
#>                         0.9998489                         0.9998505 
#>   r_ID__t0[1998_323_VN,Intercept]   r_ID__t0[1998_327_VN,Intercept] 
#>                         1.0000816                         1.0004230 
#>   r_ID__t0[1998_329_VN,Intercept]    r_ID__t0[1998_33_VN,Intercept] 
#>                         0.9998894                         1.0002768 
#>   r_ID__t0[1998_330_VN,Intercept]   r_ID__t0[1998_332_VN,Intercept] 
#>                         1.0015513                         1.0002537 
#>   r_ID__t0[1998_333_VN,Intercept]   r_ID__t0[1998_334_VN,Intercept] 
#>                         1.0000826                         0.9995901 
#>   r_ID__t0[1998_335_VN,Intercept]   r_ID__t0[1998_336_VN,Intercept] 
#>                         1.0000267                         0.9997047 
#>   r_ID__t0[1998_337_VN,Intercept]   r_ID__t0[1998_338_VN,Intercept] 
#>                         1.0001809                         1.0000923 
#>   r_ID__t0[1998_339_VN,Intercept]    r_ID__t0[1998_34_VN,Intercept] 
#>                         0.9999423                         0.9997508 
#>   r_ID__t0[1998_340_VN,Intercept]   r_ID__t0[1998_341_VN,Intercept] 
#>                         0.9998269                         1.0003535 
#>   r_ID__t0[1998_342_VN,Intercept]   r_ID__t0[1998_343_VN,Intercept] 
#>                         0.9997683                         0.9998582 
#>   r_ID__t0[1998_349_VN,Intercept]    r_ID__t0[1998_35_VN,Intercept] 
#>                         0.9999369                         0.9997555 
#>   r_ID__t0[1998_352_VN,Intercept]    r_ID__t0[1998_36_VN,Intercept] 
#>                         1.0001368                         1.0005061 
#>    r_ID__t0[1998_37_VN,Intercept]   r_ID__t0[1998_397_VN,Intercept] 
#>                         1.0005753                         0.9996383 
#>     r_ID__t0[1998_4_VN,Intercept]   r_ID__t0[1998_400_VN,Intercept] 
#>                         0.9997917                         0.9995447 
#>   r_ID__t0[1998_401_VN,Intercept]   r_ID__t0[1998_402_VN,Intercept] 
#>                         1.0001376                         0.9996565 
#>   r_ID__t0[1998_407_VN,Intercept]    r_ID__t0[1998_45_VN,Intercept] 
#>                         0.9996432                         0.9996745 
#>     r_ID__t0[1998_5_VN,Intercept]     r_ID__t0[1998_6_VN,Intercept] 
#>                         1.0000695                         0.9995852 
#>     r_ID__t0[1998_7_VN,Intercept]    r_ID__t0[1998_73_VN,Intercept] 
#>                         0.9997503                         0.9999764 
#>    r_ID__t0[1998_74_VN,Intercept]    r_ID__t0[1998_76_VN,Intercept] 
#>                         0.9996036                         1.0002056 
#>    r_ID__t0[1998_79_VN,Intercept]     r_ID__t0[1998_8_VN,Intercept] 
#>                         0.9999988                         0.9997330 
#>    r_ID__t0[1998_80_VN,Intercept]    r_ID__t0[1998_87_VN,Intercept] 
#>                         0.9999252                         0.9997988 
#>    r_ID__t0[1998_88_VN,Intercept]     r_ID__t0[1998_9_VN,Intercept] 
#>                         0.9999233                         1.0005278 
#>    r_ID__t0[1998_91_VN,Intercept]    r_ID__t0[1998_92_VN,Intercept] 
#>                         1.0001915                         1.0002958 
#>    r_ID__t0[1998_93_VN,Intercept]    r_ID__t0[1998_94_VN,Intercept] 
#>                         0.9998297                         1.0003042 
#>    r_ID__t0[1998_97_VN,Intercept]    r_ID__t0[1998_99_VN,Intercept] 
#>                         0.9996938                         1.0002341 
#>     r_ID__t0[1999_1_VN,Intercept]    r_ID__t0[1999_10_VN,Intercept] 
#>                         1.0001043                         0.9999073 
#>   r_ID__t0[1999_100_VN,Intercept]   r_ID__t0[1999_101_VN,Intercept] 
#>                         0.9999794                         1.0000553 
#>   r_ID__t0[1999_111_VN,Intercept]   r_ID__t0[1999_112_VN,Intercept] 
#>                         0.9996851                         1.0006014 
#>   r_ID__t0[1999_113_VN,Intercept]   r_ID__t0[1999_115_VN,Intercept] 
#>                         0.9998178                         0.9999075 
#>   r_ID__t0[1999_119_VN,Intercept]   r_ID__t0[1999_122_VN,Intercept] 
#>                         0.9997406                         1.0000212 
#>   r_ID__t0[1999_123_VN,Intercept]   r_ID__t0[1999_125_VN,Intercept] 
#>                         0.9997981                         0.9995664 
#>    r_ID__t0[1999_13_VN,Intercept]   r_ID__t0[1999_133_VN,Intercept] 
#>                         0.9998144                         0.9998446 
#>   r_ID__t0[1999_136_VN,Intercept]   r_ID__t0[1999_137_VN,Intercept] 
#>                         1.0000508                         0.9996112 
#>   r_ID__t0[1999_139_VN,Intercept]   r_ID__t0[1999_150_VN,Intercept] 
#>                         0.9999002                         0.9995645 
#>   r_ID__t0[1999_156_VN,Intercept]    r_ID__t0[1999_16_VN,Intercept] 
#>                         0.9999646                         0.9997685 
#>   r_ID__t0[1999_162_VN,Intercept]   r_ID__t0[1999_166_VN,Intercept] 
#>                         0.9999310                         0.9996482 
#>   r_ID__t0[1999_168_VN,Intercept]   r_ID__t0[1999_170_VN,Intercept] 
#>                         1.0000544                         0.9999371 
#>   r_ID__t0[1999_171_VN,Intercept]    r_ID__t0[1999_18_VN,Intercept] 
#>                         0.9997259                         0.9999137 
#>   r_ID__t0[1999_196_VN,Intercept]   r_ID__t0[1999_198_VN,Intercept] 
#>                         0.9997998                         0.9996834 
#>   r_ID__t0[1999_199_VN,Intercept]     r_ID__t0[1999_2_VN,Intercept] 
#>                         1.0000114                         1.0000204 
#>   r_ID__t0[1999_201_VN,Intercept]   r_ID__t0[1999_202_VN,Intercept] 
#>                         0.9999783                         1.0006219 
#>   r_ID__t0[1999_205_VN,Intercept]   r_ID__t0[1999_210_VN,Intercept] 
#>                         0.9998869                         1.0001509 
#>   r_ID__t0[1999_217_VN,Intercept]   r_ID__t0[1999_219_VN,Intercept] 
#>                         0.9997916                         0.9996991 
#>   r_ID__t0[1999_223_VN,Intercept]   r_ID__t0[1999_238_VN,Intercept] 
#>                         0.9996902                         0.9995709 
#>   r_ID__t0[1999_239_VN,Intercept]   r_ID__t0[1999_248_VN,Intercept] 
#>                         0.9999156                         0.9997085 
#>   r_ID__t0[1999_249_VN,Intercept]   r_ID__t0[1999_280_VN,Intercept] 
#>                         0.9995963                         0.9998215 
#>   r_ID__t0[1999_285_VN,Intercept]    r_ID__t0[1999_32_VN,Intercept] 
#>                         1.0000677                         0.9997765 
#>    r_ID__t0[1999_35_VN,Intercept]    r_ID__t0[1999_36_VN,Intercept] 
#>                         0.9999219                         0.9998040 
#>    r_ID__t0[1999_39_VN,Intercept]     r_ID__t0[1999_4_VN,Intercept] 
#>                         1.0003877                         1.0002081 
#>    r_ID__t0[1999_40_VN,Intercept]    r_ID__t0[1999_46_VN,Intercept] 
#>                         1.0001443                         0.9997663 
#>    r_ID__t0[1999_53_VN,Intercept]    r_ID__t0[1999_54_VN,Intercept] 
#>                         0.9999330                         0.9999196 
#>     r_ID__t0[1999_6_VN,Intercept]    r_ID__t0[1999_62_VN,Intercept] 
#>                         0.9997444                         1.0003612 
#>    r_ID__t0[1999_68_VN,Intercept]    r_ID__t0[1999_75_VN,Intercept] 
#>                         1.0000320                         1.0005456 
#>    r_ID__t0[1999_78_VN,Intercept]     r_ID__t0[1999_8_VN,Intercept] 
#>                         0.9998364                         0.9998805 
#>    r_ID__t0[1999_83_VN,Intercept]   r_ID__t0[2000_153_VN,Intercept] 
#>                         1.0001675                         0.9999710 
#>   r_ID__t0[2000_194_VN,Intercept]   r_ID__t0[2000_225_VN,Intercept] 
#>                         0.9998916                         1.0005338 
#>   r_ID__t0[2000_236_VN,Intercept]   r_ID__t0[2000_246_VN,Intercept] 
#>                         0.9996208                         0.9997277 
#>   r_ID__t0[2000_248_VN,Intercept]   r_ID__t0[2000_265_VN,Intercept] 
#>                         0.9996762                         0.9999808 
#>   r_ID__t0[2000_266_VN,Intercept]    r_ID__t0[2000_87_VN,Intercept] 
#>                         0.9997607                         1.0003940 
#>   r_ID__t0[2001_188_VN,Intercept]   r_ID__t0[2001_242_VN,Intercept] 
#>                         0.9997539                         0.9995850 
#>   r_ID__t0[2001_304_VN,Intercept]   r_ID__t0[2001_308_VN,Intercept] 
#>                         0.9998129                         1.0008046 
#>    r_ID__K[1996_246_VN,Intercept]    r_ID__K[1997_102_VN,Intercept] 
#>                         1.0019971                         1.0001627 
#>    r_ID__K[1997_105_VN,Intercept]    r_ID__K[1997_106_VN,Intercept] 
#>                         0.9998623                         1.0001165 
#>    r_ID__K[1997_107_VN,Intercept]    r_ID__K[1997_108_VN,Intercept] 
#>                         0.9996135                         1.0000055 
#>    r_ID__K[1997_109_VN,Intercept]     r_ID__K[1997_11_VN,Intercept] 
#>                         1.0001278                         0.9999860 
#>    r_ID__K[1997_110_VN,Intercept]    r_ID__K[1997_113_VN,Intercept] 
#>                         1.0002434                         1.0024368 
#>    r_ID__K[1997_115_VN,Intercept]     r_ID__K[1997_12_VN,Intercept] 
#>                         1.0022615                         0.9996886 
#>     r_ID__K[1997_13_VN,Intercept]     r_ID__K[1997_14_VN,Intercept] 
#>                         0.9999451                         1.0005573 
#>     r_ID__K[1997_15_VN,Intercept]    r_ID__K[1997_151_VN,Intercept] 
#>                         1.0003605                         1.0012558 
#>    r_ID__K[1997_152_VN,Intercept]    r_ID__K[1997_153_VN,Intercept] 
#>                         1.0041733                         0.9997724 
#>    r_ID__K[1997_156_VN,Intercept]    r_ID__K[1997_157_VN,Intercept] 
#>                         1.0013665                         0.9997884 
#>    r_ID__K[1997_159_VN,Intercept]    r_ID__K[1997_160_VN,Intercept] 
#>                         1.0032983                         1.0007280 
#>    r_ID__K[1997_162_VN,Intercept]     r_ID__K[1997_17_VN,Intercept] 
#>                         0.9998474                         1.0002958 
#>     r_ID__K[1997_18_VN,Intercept]    r_ID__K[1997_189_VN,Intercept] 
#>                         1.0000863                         1.0003358 
#>     r_ID__K[1997_19_VN,Intercept]    r_ID__K[1997_190_VN,Intercept] 
#>                         1.0011219                         0.9999132 
#>    r_ID__K[1997_192_VN,Intercept]    r_ID__K[1997_193_VN,Intercept] 
#>                         1.0001686                         0.9997779 
#>    r_ID__K[1997_195_VN,Intercept]    r_ID__K[1997_199_VN,Intercept] 
#>                         0.9996790                         0.9996761 
#>     r_ID__K[1997_20_VN,Intercept]    r_ID__K[1997_201_VN,Intercept] 
#>                         0.9998388                         1.0003869 
#>     r_ID__K[1997_21_VN,Intercept]    r_ID__K[1997_211_VN,Intercept] 
#>                         0.9995256                         0.9997901 
#>    r_ID__K[1997_212_VN,Intercept]    r_ID__K[1997_213_VN,Intercept] 
#>                         0.9998835                         1.0005185 
#>    r_ID__K[1997_217_VN,Intercept]    r_ID__K[1997_218_VN,Intercept] 
#>                         1.0001499                         1.0000391 
#>    r_ID__K[1997_219_VN,Intercept]    r_ID__K[1997_220_VN,Intercept] 
#>                         0.9998669                         1.0012271 
#>    r_ID__K[1997_222_VN,Intercept]    r_ID__K[1997_223_VN,Intercept] 
#>                         0.9996592                         1.0016339 
#>    r_ID__K[1997_226_VN,Intercept]    r_ID__K[1997_227_VN,Intercept] 
#>                         1.0003377                         0.9999231 
#>    r_ID__K[1997_229_VN,Intercept]     r_ID__K[1997_23_VN,Intercept] 
#>                         1.0000244                         0.9998010 
#>    r_ID__K[1997_230_VN,Intercept]    r_ID__K[1997_235_VN,Intercept] 
#>                         1.0021051                         1.0001713 
#>    r_ID__K[1997_236_VN,Intercept]    r_ID__K[1997_240_VN,Intercept] 
#>                         0.9996299                         1.0010494 
#>    r_ID__K[1997_241_VN,Intercept]    r_ID__K[1997_244_VN,Intercept] 
#>                         0.9998999                         1.0000280 
#>    r_ID__K[1997_248_VN,Intercept]    r_ID__K[1997_250_VN,Intercept] 
#>                         1.0004901                         0.9997731 
#>    r_ID__K[1997_252_VN,Intercept]    r_ID__K[1997_253_VN,Intercept] 
#>                         1.0023745                         1.0010045 
#>    r_ID__K[1997_254_VN,Intercept]    r_ID__K[1997_256_VN,Intercept] 
#>                         1.0018138                         0.9999552 
#>    r_ID__K[1997_257_VN,Intercept]    r_ID__K[1997_258_VN,Intercept] 
#>                         1.0012576                         1.0000061 
#>    r_ID__K[1997_263_VN,Intercept]    r_ID__K[1997_268_VN,Intercept] 
#>                         1.0026651                         1.0012107 
#>    r_ID__K[1997_270_VN,Intercept]    r_ID__K[1997_271_VN,Intercept] 
#>                         1.0002169                         1.0006401 
#>    r_ID__K[1998_102_VN,Intercept]    r_ID__K[1998_103_VN,Intercept] 
#>                         1.0012807                         0.9999101 
#>     r_ID__K[1998_11_VN,Intercept]    r_ID__K[1998_110_VN,Intercept] 
#>                         1.0016689                         1.0005107 
#>    r_ID__K[1998_111_VN,Intercept]     r_ID__K[1998_12_VN,Intercept] 
#>                         1.0001565                         1.0013508 
#>    r_ID__K[1998_121_VN,Intercept]    r_ID__K[1998_122_VN,Intercept] 
#>                         1.0007409                         0.9997424 
#>    r_ID__K[1998_123_VN,Intercept]    r_ID__K[1998_124_VN,Intercept] 
#>                         0.9998455                         0.9996591 
#>    r_ID__K[1998_125_VN,Intercept]    r_ID__K[1998_127_VN,Intercept] 
#>                         0.9997867                         1.0011196 
#>    r_ID__K[1998_128_VN,Intercept]    r_ID__K[1998_129_VN,Intercept] 
#>                         1.0000424                         0.9999520 
#>     r_ID__K[1998_13_VN,Intercept]    r_ID__K[1998_138_VN,Intercept] 
#>                         1.0002135                         1.0015181 
#>     r_ID__K[1998_14_VN,Intercept]    r_ID__K[1998_140_VN,Intercept] 
#>                         0.9999433                         1.0012444 
#>    r_ID__K[1998_143_VN,Intercept]    r_ID__K[1998_145_VN,Intercept] 
#>                         1.0000385                         0.9998083 
#>    r_ID__K[1998_146_VN,Intercept]    r_ID__K[1998_148_VN,Intercept] 
#>                         0.9998358                         1.0014123 
#>    r_ID__K[1998_149_VN,Intercept]    r_ID__K[1998_155_VN,Intercept] 
#>                         1.0039394                         1.0016860 
#>     r_ID__K[1998_17_VN,Intercept]    r_ID__K[1998_273_VN,Intercept] 
#>                         1.0018693                         1.0005752 
#>    r_ID__K[1998_285_VN,Intercept]    r_ID__K[1998_288_VN,Intercept] 
#>                         1.0021029                         1.0024020 
#>    r_ID__K[1998_289_VN,Intercept]     r_ID__K[1998_29_VN,Intercept] 
#>                         1.0006490                         1.0007586 
#>    r_ID__K[1998_290_VN,Intercept]    r_ID__K[1998_291_VN,Intercept] 
#>                         0.9997290                         0.9996331 
#>    r_ID__K[1998_292_VN,Intercept]    r_ID__K[1998_295_VN,Intercept] 
#>                         0.9999533                         1.0000296 
#>      r_ID__K[1998_3_VN,Intercept]     r_ID__K[1998_30_VN,Intercept] 
#>                         1.0020408                         1.0005340 
#>    r_ID__K[1998_303_VN,Intercept]    r_ID__K[1998_304_VN,Intercept] 
#>                         1.0005300                         1.0005693 
#>    r_ID__K[1998_305_VN,Intercept]    r_ID__K[1998_306_VN,Intercept] 
#>                         1.0001946                         1.0006876 
#>     r_ID__K[1998_31_VN,Intercept]    r_ID__K[1998_315_VN,Intercept] 
#>                         0.9998687                         1.0035628 
#>     r_ID__K[1998_32_VN,Intercept]    r_ID__K[1998_323_VN,Intercept] 
#>                         1.0003645                         1.0006697 
#>    r_ID__K[1998_327_VN,Intercept]    r_ID__K[1998_329_VN,Intercept] 
#>                         1.0020329                         0.9997760 
#>     r_ID__K[1998_33_VN,Intercept]    r_ID__K[1998_330_VN,Intercept] 
#>                         1.0000321                         1.0004690 
#>    r_ID__K[1998_332_VN,Intercept]    r_ID__K[1998_333_VN,Intercept] 
#>                         1.0003256                         1.0001165 
#>    r_ID__K[1998_334_VN,Intercept]    r_ID__K[1998_335_VN,Intercept] 
#>                         1.0002639                         0.9996337 
#>    r_ID__K[1998_336_VN,Intercept]    r_ID__K[1998_337_VN,Intercept] 
#>                         0.9996370                         1.0001802 
#>    r_ID__K[1998_338_VN,Intercept]    r_ID__K[1998_339_VN,Intercept] 
#>                         0.9997104                         1.0003023 
#>     r_ID__K[1998_34_VN,Intercept]    r_ID__K[1998_340_VN,Intercept] 
#>                         0.9996947                         1.0001975 
#>    r_ID__K[1998_341_VN,Intercept]    r_ID__K[1998_342_VN,Intercept] 
#>                         1.0005419                         0.9997748 
#>    r_ID__K[1998_343_VN,Intercept]    r_ID__K[1998_349_VN,Intercept] 
#>                         0.9996246                         1.0011598 
#>     r_ID__K[1998_35_VN,Intercept]    r_ID__K[1998_352_VN,Intercept] 
#>                         0.9996480                         1.0002018 
#>     r_ID__K[1998_36_VN,Intercept]     r_ID__K[1998_37_VN,Intercept] 
#>                         0.9996134                         1.0007525 
#>    r_ID__K[1998_397_VN,Intercept]      r_ID__K[1998_4_VN,Intercept] 
#>                         1.0006511                         1.0003304 
#>    r_ID__K[1998_400_VN,Intercept]    r_ID__K[1998_401_VN,Intercept] 
#>                         1.0019269                         0.9995243 
#>    r_ID__K[1998_402_VN,Intercept]    r_ID__K[1998_407_VN,Intercept] 
#>                         1.0024318                         1.0011282 
#>     r_ID__K[1998_45_VN,Intercept]      r_ID__K[1998_5_VN,Intercept] 
#>                         1.0040820                         1.0010624 
#>      r_ID__K[1998_6_VN,Intercept]      r_ID__K[1998_7_VN,Intercept] 
#>                         1.0011088                         1.0011766 
#>     r_ID__K[1998_73_VN,Intercept]     r_ID__K[1998_74_VN,Intercept] 
#>                         0.9996219                         1.0000461 
#>     r_ID__K[1998_76_VN,Intercept]     r_ID__K[1998_79_VN,Intercept] 
#>                         1.0018614                         0.9996764 
#>      r_ID__K[1998_8_VN,Intercept]     r_ID__K[1998_80_VN,Intercept] 
#>                         1.0004556                         1.0009226 
#>     r_ID__K[1998_87_VN,Intercept]     r_ID__K[1998_88_VN,Intercept] 
#>                         1.0006333                         1.0004828 
#>      r_ID__K[1998_9_VN,Intercept]     r_ID__K[1998_91_VN,Intercept] 
#>                         1.0002605                         1.0008123 
#>     r_ID__K[1998_92_VN,Intercept]     r_ID__K[1998_93_VN,Intercept] 
#>                         0.9998002                         0.9996915 
#>     r_ID__K[1998_94_VN,Intercept]     r_ID__K[1998_97_VN,Intercept] 
#>                         0.9999139                         1.0022326 
#>     r_ID__K[1998_99_VN,Intercept]      r_ID__K[1999_1_VN,Intercept] 
#>                         0.9998635                         1.0001939 
#>     r_ID__K[1999_10_VN,Intercept]    r_ID__K[1999_100_VN,Intercept] 
#>                         1.0026441                         1.0049297 
#>    r_ID__K[1999_101_VN,Intercept]    r_ID__K[1999_111_VN,Intercept] 
#>                         1.0032254                         0.9996250 
#>    r_ID__K[1999_112_VN,Intercept]    r_ID__K[1999_113_VN,Intercept] 
#>                         1.0010952                         0.9996727 
#>    r_ID__K[1999_115_VN,Intercept]    r_ID__K[1999_119_VN,Intercept] 
#>                         0.9999672                         1.0016326 
#>    r_ID__K[1999_122_VN,Intercept]    r_ID__K[1999_123_VN,Intercept] 
#>                         1.0015988                         1.0002483 
#>    r_ID__K[1999_125_VN,Intercept]     r_ID__K[1999_13_VN,Intercept] 
#>                         1.0002239                         0.9998456 
#>    r_ID__K[1999_133_VN,Intercept]    r_ID__K[1999_136_VN,Intercept] 
#>                         1.0029616                         0.9999208 
#>    r_ID__K[1999_137_VN,Intercept]    r_ID__K[1999_139_VN,Intercept] 
#>                         1.0022503                         1.0000519 
#>    r_ID__K[1999_150_VN,Intercept]    r_ID__K[1999_156_VN,Intercept] 
#>                         1.0015921                         0.9996111 
#>     r_ID__K[1999_16_VN,Intercept]    r_ID__K[1999_162_VN,Intercept] 
#>                         0.9999073                         1.0009508 
#>    r_ID__K[1999_166_VN,Intercept]    r_ID__K[1999_168_VN,Intercept] 
#>                         1.0007039                         1.0004267 
#>    r_ID__K[1999_170_VN,Intercept]    r_ID__K[1999_171_VN,Intercept] 
#>                         0.9997113                         1.0010819 
#>     r_ID__K[1999_18_VN,Intercept]    r_ID__K[1999_196_VN,Intercept] 
#>                         0.9998536                         1.0025570 
#>    r_ID__K[1999_198_VN,Intercept]    r_ID__K[1999_199_VN,Intercept] 
#>                         1.0014541                         1.0001055 
#>      r_ID__K[1999_2_VN,Intercept]    r_ID__K[1999_201_VN,Intercept] 
#>                         0.9996810                         0.9999787 
#>    r_ID__K[1999_202_VN,Intercept]    r_ID__K[1999_205_VN,Intercept] 
#>                         0.9998685                         1.0008260 
#>    r_ID__K[1999_210_VN,Intercept]    r_ID__K[1999_217_VN,Intercept] 
#>                         1.0002533                         1.0008103 
#>    r_ID__K[1999_219_VN,Intercept]    r_ID__K[1999_223_VN,Intercept] 
#>                         1.0002649                         1.0010683 
#>    r_ID__K[1999_238_VN,Intercept]    r_ID__K[1999_239_VN,Intercept] 
#>                         1.0029035                         0.9995692 
#>    r_ID__K[1999_248_VN,Intercept]    r_ID__K[1999_249_VN,Intercept] 
#>                         1.0021599                         1.0027954 
#>    r_ID__K[1999_280_VN,Intercept]    r_ID__K[1999_285_VN,Intercept] 
#>                         1.0028744                         1.0066131 
#>     r_ID__K[1999_32_VN,Intercept]     r_ID__K[1999_35_VN,Intercept] 
#>                         0.9997401                         0.9998592 
#>     r_ID__K[1999_36_VN,Intercept]     r_ID__K[1999_39_VN,Intercept] 
#>                         1.0005395                         1.0010799 
#>      r_ID__K[1999_4_VN,Intercept]     r_ID__K[1999_40_VN,Intercept] 
#>                         1.0010051                         1.0000757 
#>     r_ID__K[1999_46_VN,Intercept]     r_ID__K[1999_53_VN,Intercept] 
#>                         1.0014343                         1.0004585 
#>     r_ID__K[1999_54_VN,Intercept]      r_ID__K[1999_6_VN,Intercept] 
#>                         1.0029311                         1.0030515 
#>     r_ID__K[1999_62_VN,Intercept]     r_ID__K[1999_68_VN,Intercept] 
#>                         1.0017327                         1.0022550 
#>     r_ID__K[1999_75_VN,Intercept]     r_ID__K[1999_78_VN,Intercept] 
#>                         1.0009406                         1.0001708 
#>      r_ID__K[1999_8_VN,Intercept]     r_ID__K[1999_83_VN,Intercept] 
#>                         0.9996732                         1.0008066 
#>    r_ID__K[2000_153_VN,Intercept]    r_ID__K[2000_194_VN,Intercept] 
#>                         1.0009409                         0.9995946 
#>    r_ID__K[2000_225_VN,Intercept]    r_ID__K[2000_236_VN,Intercept] 
#>                         1.0027129                         0.9997864 
#>    r_ID__K[2000_246_VN,Intercept]    r_ID__K[2000_248_VN,Intercept] 
#>                         0.9998575                         0.9999193 
#>    r_ID__K[2000_265_VN,Intercept]    r_ID__K[2000_266_VN,Intercept] 
#>                         1.0006764                         0.9998525 
#>     r_ID__K[2000_87_VN,Intercept]    r_ID__K[2001_188_VN,Intercept] 
#>                         1.0013540                         1.0016925 
#>    r_ID__K[2001_242_VN,Intercept]    r_ID__K[2001_304_VN,Intercept] 
#>                         1.0007992                         1.0006237 
#>    r_ID__K[2001_308_VN,Intercept] r_ID__Linf[1996_246_VN,Intercept] 
#>                         1.0033302                         0.9996058 
#> r_ID__Linf[1997_102_VN,Intercept] r_ID__Linf[1997_105_VN,Intercept] 
#>                         0.9996311                         0.9999965 
#> r_ID__Linf[1997_106_VN,Intercept] r_ID__Linf[1997_107_VN,Intercept] 
#>                         0.9996311                         0.9998474 
#> r_ID__Linf[1997_108_VN,Intercept] r_ID__Linf[1997_109_VN,Intercept] 
#>                         0.9997632                         0.9995606 
#>  r_ID__Linf[1997_11_VN,Intercept] r_ID__Linf[1997_110_VN,Intercept] 
#>                         0.9996808                         0.9999675 
#> r_ID__Linf[1997_113_VN,Intercept] r_ID__Linf[1997_115_VN,Intercept] 
#>                         0.9997644                         1.0008508 
#>  r_ID__Linf[1997_12_VN,Intercept]  r_ID__Linf[1997_13_VN,Intercept] 
#>                         0.9997662                         0.9996919 
#>  r_ID__Linf[1997_14_VN,Intercept]  r_ID__Linf[1997_15_VN,Intercept] 
#>                         1.0001366                         1.0001124 
#> r_ID__Linf[1997_151_VN,Intercept] r_ID__Linf[1997_152_VN,Intercept] 
#>                         1.0001516                         1.0002094 
#> r_ID__Linf[1997_153_VN,Intercept] r_ID__Linf[1997_156_VN,Intercept] 
#>                         0.9996471                         1.0005465 
#> r_ID__Linf[1997_157_VN,Intercept] r_ID__Linf[1997_159_VN,Intercept] 
#>                         0.9998547                         1.0002812 
#> r_ID__Linf[1997_160_VN,Intercept] r_ID__Linf[1997_162_VN,Intercept] 
#>                         1.0002928                         0.9996275 
#>  r_ID__Linf[1997_17_VN,Intercept]  r_ID__Linf[1997_18_VN,Intercept] 
#>                         0.9998350                         1.0003166 
#> r_ID__Linf[1997_189_VN,Intercept]  r_ID__Linf[1997_19_VN,Intercept] 
#>                         0.9997421                         0.9999849 
#> r_ID__Linf[1997_190_VN,Intercept] r_ID__Linf[1997_192_VN,Intercept] 
#>                         0.9999647                         1.0006271 
#> r_ID__Linf[1997_193_VN,Intercept] r_ID__Linf[1997_195_VN,Intercept] 
#>                         0.9996039                         0.9995818 
#> r_ID__Linf[1997_199_VN,Intercept]  r_ID__Linf[1997_20_VN,Intercept] 
#>                         0.9999738                         0.9999406 
#> r_ID__Linf[1997_201_VN,Intercept]  r_ID__Linf[1997_21_VN,Intercept] 
#>                         0.9997996                         0.9998314 
#> r_ID__Linf[1997_211_VN,Intercept] r_ID__Linf[1997_212_VN,Intercept] 
#>                         0.9998472                         0.9996576 
#> r_ID__Linf[1997_213_VN,Intercept] r_ID__Linf[1997_217_VN,Intercept] 
#>                         1.0001243                         0.9996521 
#> r_ID__Linf[1997_218_VN,Intercept] r_ID__Linf[1997_219_VN,Intercept] 
#>                         0.9997518                         0.9998740 
#> r_ID__Linf[1997_220_VN,Intercept] r_ID__Linf[1997_222_VN,Intercept] 
#>                         0.9995885                         1.0005453 
#> r_ID__Linf[1997_223_VN,Intercept] r_ID__Linf[1997_226_VN,Intercept] 
#>                         1.0004322                         0.9996333 
#> r_ID__Linf[1997_227_VN,Intercept] r_ID__Linf[1997_229_VN,Intercept] 
#>                         0.9998751                         1.0002331 
#>  r_ID__Linf[1997_23_VN,Intercept] r_ID__Linf[1997_230_VN,Intercept] 
#>                         0.9999095                         1.0001175 
#> r_ID__Linf[1997_235_VN,Intercept] r_ID__Linf[1997_236_VN,Intercept] 
#>                         0.9998026                         0.9997271 
#> r_ID__Linf[1997_240_VN,Intercept] r_ID__Linf[1997_241_VN,Intercept] 
#>                         0.9998616                         1.0003856 
#> r_ID__Linf[1997_244_VN,Intercept] r_ID__Linf[1997_248_VN,Intercept] 
#>                         1.0000888                         0.9995493 
#> r_ID__Linf[1997_250_VN,Intercept] r_ID__Linf[1997_252_VN,Intercept] 
#>                         0.9998654                         0.9999841 
#> r_ID__Linf[1997_253_VN,Intercept] r_ID__Linf[1997_254_VN,Intercept] 
#>                         1.0000787                         0.9996955 
#> r_ID__Linf[1997_256_VN,Intercept] r_ID__Linf[1997_257_VN,Intercept] 
#>                         0.9996122                         1.0003143 
#> r_ID__Linf[1997_258_VN,Intercept] r_ID__Linf[1997_263_VN,Intercept] 
#>                         0.9999533                         0.9998847 
#> r_ID__Linf[1997_268_VN,Intercept] r_ID__Linf[1997_270_VN,Intercept] 
#>                         0.9998679                         0.9999480 
#> r_ID__Linf[1997_271_VN,Intercept] r_ID__Linf[1998_102_VN,Intercept] 
#>                         0.9995286                         1.0000444 
#> r_ID__Linf[1998_103_VN,Intercept]  r_ID__Linf[1998_11_VN,Intercept] 
#>                         0.9998182                         0.9999812 
#> r_ID__Linf[1998_110_VN,Intercept] r_ID__Linf[1998_111_VN,Intercept] 
#>                         1.0000615                         0.9996101 
#>  r_ID__Linf[1998_12_VN,Intercept] r_ID__Linf[1998_121_VN,Intercept] 
#>                         1.0008435                         1.0002775 
#> r_ID__Linf[1998_122_VN,Intercept] r_ID__Linf[1998_123_VN,Intercept] 
#>                         1.0000101                         0.9997121 
#> r_ID__Linf[1998_124_VN,Intercept] r_ID__Linf[1998_125_VN,Intercept] 
#>                         0.9996054                         1.0002174 
#> r_ID__Linf[1998_127_VN,Intercept] r_ID__Linf[1998_128_VN,Intercept] 
#>                         1.0005400                         0.9996591 
#> r_ID__Linf[1998_129_VN,Intercept]  r_ID__Linf[1998_13_VN,Intercept] 
#>                         0.9996065                         0.9999954 
#> r_ID__Linf[1998_138_VN,Intercept]  r_ID__Linf[1998_14_VN,Intercept] 
#>                         0.9997264                         0.9999701 
#> r_ID__Linf[1998_140_VN,Intercept] r_ID__Linf[1998_143_VN,Intercept] 
#>                         1.0004280                         1.0004264 
#> r_ID__Linf[1998_145_VN,Intercept] r_ID__Linf[1998_146_VN,Intercept] 
#>                         0.9996381                         0.9995782 
#> r_ID__Linf[1998_148_VN,Intercept] r_ID__Linf[1998_149_VN,Intercept] 
#>                         1.0001802                         1.0016041 
#> r_ID__Linf[1998_155_VN,Intercept]  r_ID__Linf[1998_17_VN,Intercept] 
#>                         0.9999860                         1.0006521 
#> r_ID__Linf[1998_273_VN,Intercept] r_ID__Linf[1998_285_VN,Intercept] 
#>                         1.0002502                         1.0002199 
#> r_ID__Linf[1998_288_VN,Intercept] r_ID__Linf[1998_289_VN,Intercept] 
#>                         1.0003320                         1.0004620 
#>  r_ID__Linf[1998_29_VN,Intercept] r_ID__Linf[1998_290_VN,Intercept] 
#>                         1.0001888                         1.0000477 
#> r_ID__Linf[1998_291_VN,Intercept] r_ID__Linf[1998_292_VN,Intercept] 
#>                         0.9996377                         0.9997033 
#> r_ID__Linf[1998_295_VN,Intercept]   r_ID__Linf[1998_3_VN,Intercept] 
#>                         0.9995406                         0.9997839 
#>  r_ID__Linf[1998_30_VN,Intercept] r_ID__Linf[1998_303_VN,Intercept] 
#>                         1.0004183                         0.9998191 
#> r_ID__Linf[1998_304_VN,Intercept] r_ID__Linf[1998_305_VN,Intercept] 
#>                         1.0000995                         0.9995833 
#> r_ID__Linf[1998_306_VN,Intercept]  r_ID__Linf[1998_31_VN,Intercept] 
#>                         1.0002265                         0.9997450 
#> r_ID__Linf[1998_315_VN,Intercept]  r_ID__Linf[1998_32_VN,Intercept] 
#>                         1.0005323                         0.9999083 
#> r_ID__Linf[1998_323_VN,Intercept] r_ID__Linf[1998_327_VN,Intercept] 
#>                         0.9998473                         1.0007298 
#> r_ID__Linf[1998_329_VN,Intercept]  r_ID__Linf[1998_33_VN,Intercept] 
#>                         1.0001752                         0.9997841 
#> r_ID__Linf[1998_330_VN,Intercept] r_ID__Linf[1998_332_VN,Intercept] 
#>                         0.9997092                         1.0002116 
#> r_ID__Linf[1998_333_VN,Intercept] r_ID__Linf[1998_334_VN,Intercept] 
#>                         0.9998620                         0.9999319 
#> r_ID__Linf[1998_335_VN,Intercept] r_ID__Linf[1998_336_VN,Intercept] 
#>                         0.9998973                         0.9997740 
#> r_ID__Linf[1998_337_VN,Intercept] r_ID__Linf[1998_338_VN,Intercept] 
#>                         0.9998496                         0.9998509 
#> r_ID__Linf[1998_339_VN,Intercept]  r_ID__Linf[1998_34_VN,Intercept] 
#>                         0.9998043                         0.9996842 
#> r_ID__Linf[1998_340_VN,Intercept] r_ID__Linf[1998_341_VN,Intercept] 
#>                         0.9999755                         1.0004148 
#> r_ID__Linf[1998_342_VN,Intercept] r_ID__Linf[1998_343_VN,Intercept] 
#>                         0.9997059                         0.9999476 
#> r_ID__Linf[1998_349_VN,Intercept]  r_ID__Linf[1998_35_VN,Intercept] 
#>                         1.0000158                         0.9998195 
#> r_ID__Linf[1998_352_VN,Intercept]  r_ID__Linf[1998_36_VN,Intercept] 
#>                         0.9998970                         0.9995988 
#>  r_ID__Linf[1998_37_VN,Intercept] r_ID__Linf[1998_397_VN,Intercept] 
#>                         0.9996501                         0.9999873 
#>   r_ID__Linf[1998_4_VN,Intercept] r_ID__Linf[1998_400_VN,Intercept] 
#>                         1.0000510                         1.0011179 
#> r_ID__Linf[1998_401_VN,Intercept] r_ID__Linf[1998_402_VN,Intercept] 
#>                         0.9998632                         0.9998530 
#> r_ID__Linf[1998_407_VN,Intercept]  r_ID__Linf[1998_45_VN,Intercept] 
#>                         1.0004664                         1.0003802 
#>   r_ID__Linf[1998_5_VN,Intercept]   r_ID__Linf[1998_6_VN,Intercept] 
#>                         1.0003279                         1.0002825 
#>   r_ID__Linf[1998_7_VN,Intercept]  r_ID__Linf[1998_73_VN,Intercept] 
#>                         1.0008239                         0.9999234 
#>  r_ID__Linf[1998_74_VN,Intercept]  r_ID__Linf[1998_76_VN,Intercept] 
#>                         0.9998695                         0.9998534 
#>  r_ID__Linf[1998_79_VN,Intercept]   r_ID__Linf[1998_8_VN,Intercept] 
#>                         0.9996882                         0.9999222 
#>  r_ID__Linf[1998_80_VN,Intercept]  r_ID__Linf[1998_87_VN,Intercept] 
#>                         0.9997401                         1.0000858 
#>  r_ID__Linf[1998_88_VN,Intercept]   r_ID__Linf[1998_9_VN,Intercept] 
#>                         0.9997311                         0.9998601 
#>  r_ID__Linf[1998_91_VN,Intercept]  r_ID__Linf[1998_92_VN,Intercept] 
#>                         1.0000530                         1.0001972 
#>  r_ID__Linf[1998_93_VN,Intercept]  r_ID__Linf[1998_94_VN,Intercept] 
#>                         0.9998906                         0.9999337 
#>  r_ID__Linf[1998_97_VN,Intercept]  r_ID__Linf[1998_99_VN,Intercept] 
#>                         1.0012621                         0.9997914 
#>   r_ID__Linf[1999_1_VN,Intercept]  r_ID__Linf[1999_10_VN,Intercept] 
#>                         0.9997421                         1.0010366 
#> r_ID__Linf[1999_100_VN,Intercept] r_ID__Linf[1999_101_VN,Intercept] 
#>                         1.0016346                         1.0014334 
#> r_ID__Linf[1999_111_VN,Intercept] r_ID__Linf[1999_112_VN,Intercept] 
#>                         0.9997910                         1.0003894 
#> r_ID__Linf[1999_113_VN,Intercept] r_ID__Linf[1999_115_VN,Intercept] 
#>                         0.9999640                         0.9997126 
#> r_ID__Linf[1999_119_VN,Intercept] r_ID__Linf[1999_122_VN,Intercept] 
#>                         1.0001734                         1.0001870 
#> r_ID__Linf[1999_123_VN,Intercept] r_ID__Linf[1999_125_VN,Intercept] 
#>                         0.9999472                         1.0005829 
#>  r_ID__Linf[1999_13_VN,Intercept] r_ID__Linf[1999_133_VN,Intercept] 
#>                         0.9996095                         1.0000563 
#> r_ID__Linf[1999_136_VN,Intercept] r_ID__Linf[1999_137_VN,Intercept] 
#>                         0.9997365                         1.0002269 
#> r_ID__Linf[1999_139_VN,Intercept] r_ID__Linf[1999_150_VN,Intercept] 
#>                         1.0001023                         1.0003604 
#> r_ID__Linf[1999_156_VN,Intercept]  r_ID__Linf[1999_16_VN,Intercept] 
#>                         0.9998426                         0.9996224 
#> r_ID__Linf[1999_162_VN,Intercept] r_ID__Linf[1999_166_VN,Intercept] 
#>                         1.0000985                         0.9996246 
#> r_ID__Linf[1999_168_VN,Intercept] r_ID__Linf[1999_170_VN,Intercept] 
#>                         1.0000318                         1.0002087 
#> r_ID__Linf[1999_171_VN,Intercept]  r_ID__Linf[1999_18_VN,Intercept] 
#>                         0.9999132                         0.9996419 
#> r_ID__Linf[1999_196_VN,Intercept] r_ID__Linf[1999_198_VN,Intercept] 
#>                         1.0009676                         1.0001625 
#> r_ID__Linf[1999_199_VN,Intercept]   r_ID__Linf[1999_2_VN,Intercept] 
#>                         0.9996115                         0.9998168 
#> r_ID__Linf[1999_201_VN,Intercept] r_ID__Linf[1999_202_VN,Intercept] 
#>                         0.9998040                         0.9996328 
#> r_ID__Linf[1999_205_VN,Intercept] r_ID__Linf[1999_210_VN,Intercept] 
#>                         1.0006817                         1.0000067 
#> r_ID__Linf[1999_217_VN,Intercept] r_ID__Linf[1999_219_VN,Intercept] 
#>                         1.0007132                         1.0003194 
#> r_ID__Linf[1999_223_VN,Intercept] r_ID__Linf[1999_238_VN,Intercept] 
#>                         1.0001104                         1.0002551 
#> r_ID__Linf[1999_239_VN,Intercept] r_ID__Linf[1999_248_VN,Intercept] 
#>                         0.9996675                         1.0003586 
#> r_ID__Linf[1999_249_VN,Intercept] r_ID__Linf[1999_280_VN,Intercept] 
#>                         1.0013251                         0.9997276 
#> r_ID__Linf[1999_285_VN,Intercept]  r_ID__Linf[1999_32_VN,Intercept] 
#>                         1.0024552                         0.9998228 
#>  r_ID__Linf[1999_35_VN,Intercept]  r_ID__Linf[1999_36_VN,Intercept] 
#>                         1.0001085                         1.0000934 
#>  r_ID__Linf[1999_39_VN,Intercept]   r_ID__Linf[1999_4_VN,Intercept] 
#>                         1.0004627                         1.0004367 
#>  r_ID__Linf[1999_40_VN,Intercept]  r_ID__Linf[1999_46_VN,Intercept] 
#>                         1.0003242                         1.0001227 
#>  r_ID__Linf[1999_53_VN,Intercept]  r_ID__Linf[1999_54_VN,Intercept] 
#>                         1.0005257                         1.0017512 
#>   r_ID__Linf[1999_6_VN,Intercept]  r_ID__Linf[1999_62_VN,Intercept] 
#>                         1.0007951                         1.0009803 
#>  r_ID__Linf[1999_68_VN,Intercept]  r_ID__Linf[1999_75_VN,Intercept] 
#>                         1.0011974                         1.0001762 
#>  r_ID__Linf[1999_78_VN,Intercept]   r_ID__Linf[1999_8_VN,Intercept] 
#>                         1.0004856                         1.0002548 
#>  r_ID__Linf[1999_83_VN,Intercept] r_ID__Linf[2000_153_VN,Intercept] 
#>                         1.0001460                         1.0015146 
#> r_ID__Linf[2000_194_VN,Intercept] r_ID__Linf[2000_225_VN,Intercept] 
#>                         0.9998187                         1.0013636 
#> r_ID__Linf[2000_236_VN,Intercept] r_ID__Linf[2000_246_VN,Intercept] 
#>                         0.9995822                         1.0000530 
#> r_ID__Linf[2000_248_VN,Intercept] r_ID__Linf[2000_265_VN,Intercept] 
#>                         1.0000436                         1.0007115 
#> r_ID__Linf[2000_266_VN,Intercept]  r_ID__Linf[2000_87_VN,Intercept] 
#>                         0.9997598                         0.9997350 
#> r_ID__Linf[2001_188_VN,Intercept] r_ID__Linf[2001_242_VN,Intercept] 
#>                         1.0004706                         1.0003130 
#> r_ID__Linf[2001_304_VN,Intercept] r_ID__Linf[2001_308_VN,Intercept] 
#>                         1.0002635                         1.0026799 
#>                            lprior                              lp__ 
#>                         0.9999686                         1.0034517
plot(mtest)

summary(mtest)
#>  Family: gaussian 
#>   Links: mu = identity; sigma = identity 
#> Formula: length_cm ~ Linf * (1 - exp(-K * (age_bc - t0))) 
#>          t0 ~ 1 + (1 | ID)
#>          K ~ 1 + (1 | ID)
#>          Linf ~ 1 + (1 | ID)
#>    Data: filter(d_vin, cohort == 1995) (Number of observations: 938) 
#>   Draws: 3 chains, each with iter = 4000; warmup = 2000; thin = 1;
#>          total post-warmup draws = 6000
#> 
#> Group-Level Effects: 
#> ~ID (Number of levels: 229) 
#>                    Estimate Est.Error l-95% CI u-95% CI Rhat Bulk_ESS Tail_ESS
#> sd(t0_Intercept)       0.02      0.01     0.00     0.05 1.00     1544     2370
#> sd(K_Intercept)        0.00      0.00     0.00     0.01 1.01      167      545
#> sd(Linf_Intercept)     4.32      0.40     3.61     5.19 1.00     1476     2727
#> 
#> Population-Level Effects: 
#>                Estimate Est.Error l-95% CI u-95% CI Rhat Bulk_ESS Tail_ESS
#> t0_Intercept      -0.22      0.04    -0.29    -0.14 1.00     3096     3214
#> K_Intercept        0.12      0.01     0.10     0.14 1.00     2633     3161
#> Linf_Intercept    48.67      3.14    43.18    55.40 1.00     2603     3334
#> 
#> Family Specific Parameters: 
#>       Estimate Est.Error l-95% CI u-95% CI Rhat Bulk_ESS Tail_ESS
#> sigma     1.09      0.03     1.03     1.15 1.00     5267     4140
#> 
#> Draws were sampled using sampling(NUTS). For each parameter, Bulk_ESS
#> and Tail_ESS are effective sample size measures, and Rhat is the potential
#> scale reduction factor on split chains (at convergence, Rhat = 1).

# Plot predictions by ID
d_vin %>%
  filter(cohort == 1995) %>% 
  add_predicted_draws(mtest) %>%
  ggplot(aes(x = age_bc, y = length_cm, color = ID, fill = ID)) +
  stat_lineribbon(aes(y = .prediction, group = ID), .width = .95, alpha = 0.1, size = 0.5) +
  stat_lineribbon(aes(y = .prediction, group = ID), .width = 0, alpha = 0.5, size = 0.5) +
  geom_jitter(data = filter(d_vin, cohort == 1995),
              width = 0.3, height = 0, size = 2) +
  scale_fill_viridis(discrete = TRUE) +
  scale_color_viridis(discrete = TRUE) +
  labs(y = "Length [cm]", x = "Age [yrs]", fill = "ID", colour = "ID") +
  guides(color = "none", fill = "none") + 
  NULL

# Plot global predictions
d_vin %>%
  filter(cohort == 1995) %>% 
  data_grid(age_bc = seq_range(age_bc, by = 1)) %>% 
  add_predicted_draws(mtest, re_formula = NA) %>%
  ggplot(aes(x = age_bc, y = length_cm)) +
  stat_lineribbon(aes(y = .prediction), .width = .95, alpha = 0.4) +
  geom_jitter(data = filter(d_vin, cohort == 1995),
              alpha = 0.1, width = 0.3,
              height = 0, size = 2) +
  labs(y = "Length [cm]", x = "Age [yrs]") +
  NULL

# Plot individual-level parameters
get_variables(mtest)

# t0
mtest %>%
  spread_draws(b_t0_Intercept,
               r_ID__t0[ID, Intercept]) %>%
  mutate(mean_t0 = b_t0_Intercept + r_ID__t0) %>% # The random effects are offsets
  ggplot(aes(y = factor(ID), x = mean_t0)) +
  stat_pointinterval(.width = 0.95, alpha = 0.2) +  
  theme(axis.text.y = element_text(size = 3)) + 
  ggtitle("ID-level t0 with 50% credible interval (global in red)") + 
  geom_vline(xintercept = mean(spread_draws(mtest, b_t0_Intercept)$b_t0_Intercept), 
             color = "tomato", linetype = 2) + 
  NULL

# K
mtest %>%
  spread_draws(b_K_Intercept,
               r_ID__K[ID, Intercept]) %>%
  mutate(mean_K = b_K_Intercept + r_ID__K) %>% # The random effects are offsets
  ggplot(aes(y = factor(ID), x = mean_K)) +
  stat_pointinterval(.width = 0.95, alpha = 0.2) +  
  theme(axis.text.y = element_text(size = 3)) + 
  ggtitle("ID-level K with 50% credible interval (global in red)") + 
  geom_vline(xintercept = mean(spread_draws(mtest, b_K_Intercept)$b_K_Intercept), 
             color = "tomato", linetype = 2) + 
  NULL

# L_inf
mtest %>%
  spread_draws(b_Linf_Intercept,
               r_ID__Linf[ID, Intercept]) %>%
  mutate(mean_Linf = b_Linf_Intercept + r_ID__Linf) %>% # The random effects are offsets
  ggplot(aes(y = factor(ID), x = mean_Linf)) +
  stat_pointinterval(.width = 0.95, alpha = 0.2) +  
  theme(axis.text.y = element_text(size = 3)) + 
  ggtitle("ID-level Linf with 50% credible interval (global in red)") + 
  geom_vline(xintercept = mean(spread_draws(mtest, b_Linf_Intercept)$b_Linf_Intercept), 
             color = "tomato", linetype = 2) + 
  NULL

Ok, good enough. Now loop through all cohorts and fit the same model, summarize quantiles of each cohorts parameter estimates and save in a dataframe

ggplot(filter(d, age_catch < 5), aes(age_bc, length_cm)) + 
  geom_point()
#> filter: removed 166,986 rows (46%), 196,156 rows remaining

# Fit model with parameters varying by ID. First filter a single year to test speed

quant_list <- list()

d$area_cohort_id <- paste(d$area, d$cohort, sep = "_")

for(i in unique(d$area_cohort_id)) {
  
  dd <- filter(d, area_cohort_id == i)
  
  m <- 
    brm(
      bf(length_cm ~ Linf*(1-exp(-K*(age_bc-t0))),
         t0 ~ 1 + (1|ID),
         K ~ 1 + (1|ID),  
         Linf ~ 1 + (1|ID),
         nl = TRUE), 
      data = dd,
      family = gaussian(),
      prior = c(prior(normal(45, 20), nlpar = "Linf"),
                prior(normal(-0.5, 1), nlpar = "t0"),
                prior(normal(0.2, 0.1), nlpar = "K")),
      iter = 3000,
      thin = 1,
      cores = 3,
      chains = 3,
      seed = 9)
    
    quants <- m %>%
      spread_draws(b_Linf_Intercept, b_K_Intercept) %>% 
      summarise(K_01 = quantile(b_K_Intercept, probs = 0.1),
                K_025 = quantile(b_K_Intercept, probs = 0.25),
                K_05 = quantile(b_K_Intercept, probs = 0.5),
                K_075 = quantile(b_K_Intercept, probs = 0.75),
                K_09 = quantile(b_K_Intercept, probs = 0.9),
                Linf_01 = quantile(b_Linf_Intercept, probs = 0.1),
                Linf_025 = quantile(b_Linf_Intercept, probs = 0.25),
                Linf_05 = quantile(b_Linf_Intercept, probs = 0.5),
                Linf_075 = quantile(b_Linf_Intercept, probs = 0.75),
                Linf_09 = quantile(b_Linf_Intercept, probs = 0.9)) %>% 
      mutate(max_rhat = round(max(rhat(m)), digits = 3)) %>% 
      as.data.frame()
    
    list_pos_q1 <- as.numeric(as.factor(i))
    
    quant_list[[i]] <- quants

  }
#> filter: removed 362,707 rows (>99%), 435 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,258 rows (>99%), 884 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,332 rows (>99%), 810 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.07, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat

#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,168 rows (>99%), 974 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,047 rows (>99%), 95 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 44 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1364 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,894 rows (>99%), 248 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 53 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1447 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,891 rows (>99%), 251 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,657 rows (>99%), 485 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,086 rows (>99%), 1,056 rows remaining
#> Compiling Stan program...
#> recompiling to avoid crashing R session
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,837 rows (>99%), 305 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 398 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.75, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,339 rows (>99%), 803 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,736 rows (>99%), 406 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat

#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,165 rows (>99%), 977 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1495 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: There were 1 chains where the estimated Bayesian Fraction of Missing Information was low. See
#> http://mc-stan.org/misc/warnings.html#bfmi-low
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.78, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,302 rows (>99%), 840 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,429 rows (>99%), 713 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,318 rows (>99%), 824 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,190 rows (>99%), 952 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,063 rows (>99%), 1,079 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,530 rows (>99%), 612 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.77, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,227 rows (>99%), 915 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 17 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,901 rows (>99%), 1,241 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 16 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,299 rows (>99%), 843 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 102 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,232 rows (>99%), 910 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,415 rows (>99%), 727 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,448 rows (>99%), 694 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 24 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,762 rows (>99%), 380 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,558 rows (>99%), 584 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 66 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,634 rows (>99%), 508 rows remaining
#> Compiling Stan program...
#> recompiling to avoid crashing R session
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,699 rows (>99%), 443 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 14 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,319 rows (>99%), 823 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,812 rows (>99%), 330 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 35 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 2 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,863 rows (>99%), 279 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,935 rows (>99%), 207 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,613 rows (>99%), 529 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,548 rows (>99%), 594 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 2.38, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,467 rows (>99%), 675 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.39, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,806 rows (>99%), 336 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,873 rows (>99%), 269 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,866 rows (>99%), 276 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,970 rows (>99%), 172 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,975 rows (>99%), 167 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,840 rows (>99%), 302 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,752 rows (>99%), 390 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,038 rows (>99%), 104 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,968 rows (>99%), 174 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 3 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,123 rows (>99%), 19 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 129 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,036 rows (>99%), 106 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,038 rows (>99%), 104 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 408 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.94, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,088 rows (>99%), 54 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 199 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 881 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: There were 2 chains where the estimated Bayesian Fraction of Missing Information was low. See
#> http://mc-stan.org/misc/warnings.html#bfmi-low
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,939 rows (>99%), 1,203 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 11 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,594 rows (>99%), 1,548 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,513 rows (>99%), 629 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,382 rows (>99%), 1,760 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,836 rows (>99%), 1,306 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 2 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.76, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,696 rows (>99%), 1,446 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,915 rows (>99%), 227 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 26 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.38, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,013 rows (>99%), 1,129 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,258 rows (99%), 1,884 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,651 rows (>99%), 491 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,964 rows (>99%), 178 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,042 rows (>99%), 100 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 133 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 18 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.36, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 359,297 rows (99%), 3,845 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 35 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,328 rows (>99%), 814 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 14 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.7, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,771 rows (>99%), 371 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,025 rows (>99%), 117 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,349 rows (>99%), 793 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,069 rows (>99%), 1,073 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 3000 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.87, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,525 rows (>99%), 1,617 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,777 rows (>99%), 1,365 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,655 rows (>99%), 487 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,390 rows (>99%), 752 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,048 rows (>99%), 1,094 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,868 rows (>99%), 274 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,331 rows (>99%), 811 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 2 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: There were 1 chains where the estimated Bayesian Fraction of Missing Information was low. See
#> http://mc-stan.org/misc/warnings.html#bfmi-low
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.81, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,830 rows (>99%), 312 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 10 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,038 rows (>99%), 104 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 144 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 167 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,392 rows (>99%), 750 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,595 rows (>99%), 547 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,920 rows (>99%), 222 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 395 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.

#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.92, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,715 rows (>99%), 427 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.38, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,531 rows (>99%), 611 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.72, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,611 rows (>99%), 1,531 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,234 rows (>99%), 908 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 8 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.

#> Warning: Examine the pairs() plot to diagnose sampling problems
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,698 rows (>99%), 1,444 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded

#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,394 rows (>99%), 1,748 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.77, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 360,806 rows (99%), 2,336 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 397 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.03, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,702 rows (>99%), 1,440 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1332 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 168 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.8, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,243 rows (>99%), 899 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,437 rows (>99%), 1,705 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 359,545 rows (99%), 3,597 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.73, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,256 rows (99%), 1,886 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,680 rows (>99%), 1,462 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.09, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,662 rows (>99%), 1,480 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 9 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,372 rows (>99%), 1,770 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,202 rows (>99%), 940 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 360,267 rows (99%), 2,875 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,622 rows (>99%), 1,520 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 5 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,723 rows (>99%), 1,419 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 359,881 rows (99%), 3,261 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 539 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 961 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: There were 1 chains where the estimated Bayesian Fraction of Missing Information was low. See
#> http://mc-stan.org/misc/warnings.html#bfmi-low
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.81, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,550 rows (>99%), 592 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 360,660 rows (99%), 2,482 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,075 rows (99%), 2,067 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 93 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1407 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.8, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,512 rows (>99%), 1,630 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 360,431 rows (99%), 2,711 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 414 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1104 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.76, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,003 rows (>99%), 1,139 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 360,783 rows (99%), 2,359 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.8, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,472 rows (>99%), 670 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,363 rows (>99%), 779 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,671 rows (>99%), 1,471 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,089 rows (99%), 2,053 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 901 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 629 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: There were 1 chains where the estimated Bayesian Fraction of Missing Information was low. See
#> http://mc-stan.org/misc/warnings.html#bfmi-low
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.79, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,012 rows (>99%), 1,130 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 4 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 360,795 rows (99%), 2,347 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat

#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,448 rows (>99%), 1,694 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,262 rows (>99%), 880 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,832 rows (>99%), 1,310 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,968 rows (>99%), 1,174 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat

#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,542 rows (>99%), 600 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,516 rows (>99%), 626 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,879 rows (>99%), 263 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,994 rows (>99%), 148 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 6 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,104 rows (>99%), 38 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 845 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.05, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,895 rows (>99%), 247 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,959 rows (>99%), 183 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 4410 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.47, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,688 rows (>99%), 454 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,868 rows (>99%), 274 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,216 rows (>99%), 926 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,230 rows (99%), 1,912 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,970 rows (>99%), 1,172 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 612 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,420 rows (>99%), 722 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,576 rows (>99%), 1,566 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 19 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 358,545 rows (99%), 4,597 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat

#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,827 rows (>99%), 1,315 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 3000 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.75, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 360,648 rows (99%), 2,494 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,180 rows (>99%), 962 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,779 rows (>99%), 363 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1363 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,602 rows (>99%), 540 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,812 rows (>99%), 330 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 82 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,277 rows (>99%), 865 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 8 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,653 rows (>99%), 1,489 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 3000 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 360,547 rows (99%), 2,595 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 446 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1054 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.8, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,795 rows (>99%), 1,347 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1499 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,228 rows (99%), 1,914 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,581 rows (>99%), 1,561 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,105 rows (>99%), 1,037 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.07, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,094 rows (>99%), 1,048 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,915 rows (>99%), 1,227 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,160 rows (99%), 1,982 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 3000 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.8, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,656 rows (>99%), 1,486 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 17 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 360,889 rows (99%), 2,253 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1499 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.91, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 360,932 rows (99%), 2,210 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 4 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,099 rows (99%), 2,043 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 24 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,722 rows (>99%), 1,420 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: There were 1 chains where the estimated Bayesian Fraction of Missing Information was low. See
#> http://mc-stan.org/misc/warnings.html#bfmi-low
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.21, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,040 rows (99%), 2,102 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 427 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 2573 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.81, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,485 rows (>99%), 1,657 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 9 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1499 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.8, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,906 rows (>99%), 1,236 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 2 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 4 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,578 rows (>99%), 1,564 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,376 rows (>99%), 766 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.69, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,327 rows (>99%), 815 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,303 rows (>99%), 839 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,478 rows (>99%), 1,664 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 15 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,754 rows (>99%), 1,388 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,123 rows (>99%), 1,019 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,871 rows (>99%), 1,271 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,082 rows (>99%), 1,060 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 62 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,049 rows (>99%), 1,093 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,106 rows (99%), 2,036 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,750 rows (>99%), 1,392 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,836 rows (>99%), 306 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,471 rows (>99%), 1,671 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,437 rows (>99%), 705 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,534 rows (>99%), 608 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,199 rows (99%), 1,943 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,104 rows (>99%), 1,038 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 48 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 31 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.74, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,920 rows (>99%), 222 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 30 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.2, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,446 rows (>99%), 696 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,280 rows (>99%), 862 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,868 rows (>99%), 1,274 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.69, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,769 rows (>99%), 1,373 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,517 rows (>99%), 625 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.69, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,257 rows (>99%), 885 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,792 rows (>99%), 350 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,761 rows (>99%), 381 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,709 rows (>99%), 433 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,945 rows (>99%), 197 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1802 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.36, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 360,576 rows (99%), 2,566 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.78, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,597 rows (>99%), 545 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,912 rows (>99%), 1,230 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,965 rows (>99%), 1,177 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,779 rows (>99%), 363 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,328 rows (>99%), 814 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,470 rows (>99%), 672 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.1, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,817 rows (>99%), 325 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 2 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1524 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,735 rows (>99%), 1,407 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,605 rows (>99%), 537 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.7, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,097 rows (>99%), 1,045 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,661 rows (>99%), 481 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,760 rows (>99%), 1,382 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,265 rows (>99%), 877 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 11 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,476 rows (>99%), 666 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,485 rows (>99%), 1,657 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.51, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,670 rows (>99%), 472 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.76, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,881 rows (>99%), 261 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,351 rows (>99%), 791 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,042 rows (>99%), 1,100 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,505 rows (>99%), 637 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,473 rows (>99%), 669 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 2.15, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,468 rows (>99%), 674 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.69, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,403 rows (>99%), 739 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,814 rows (>99%), 328 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,538 rows (>99%), 604 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,516 rows (>99%), 626 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,691 rows (>99%), 451 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,685 rows (>99%), 457 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.09, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,913 rows (>99%), 229 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,868 rows (>99%), 274 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 11 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 113 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.72, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,091 rows (>99%), 51 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 617 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1008 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: There were 1 chains where the estimated Bayesian Fraction of Missing Information was low. See
#> http://mc-stan.org/misc/warnings.html#bfmi-low
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.08, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,338 rows (>99%), 804 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,107 rows (>99%), 1,035 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,028 rows (>99%), 1,114 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,277 rows (>99%), 865 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,101 rows (>99%), 1,041 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,121 rows (>99%), 1,021 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 964 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,511 rows (>99%), 631 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,557 rows (>99%), 585 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,779 rows (>99%), 363 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,440 rows (>99%), 702 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,378 rows (>99%), 764 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,315 rows (99%), 1,827 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 4 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,370 rows (>99%), 772 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat

#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 360,981 rows (99%), 2,161 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,457 rows (>99%), 685 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,762 rows (>99%), 380 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,203 rows (99%), 1,939 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,956 rows (>99%), 186 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 2 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,663 rows (>99%), 479 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 390 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.

#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.73, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,304 rows (>99%), 838 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.71, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,271 rows (>99%), 871 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,497 rows (>99%), 645 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.73, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,931 rows (>99%), 211 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,146 rows (>99%), 996 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,609 rows (>99%), 533 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 123 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,471 rows (>99%), 671 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 29 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.72, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,381 rows (>99%), 761 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,613 rows (>99%), 529 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 10 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1490 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.74, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,652 rows (>99%), 490 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,524 rows (>99%), 618 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,122 rows (>99%), 1,020 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,649 rows (>99%), 493 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 114 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,594 rows (>99%), 548 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,577 rows (>99%), 565 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,816 rows (>99%), 326 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,731 rows (>99%), 411 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,708 rows (>99%), 1,434 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,427 rows (>99%), 715 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: There were 1 chains where the estimated Bayesian Fraction of Missing Information was low. See
#> http://mc-stan.org/misc/warnings.html#bfmi-low
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.81, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,469 rows (>99%), 673 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 3 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,127 rows (>99%), 1,015 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,129 rows (99%), 2,013 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,499 rows (>99%), 643 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.75, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,686 rows (>99%), 456 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,127 rows (99%), 2,015 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,221 rows (>99%), 921 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 46 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,462 rows (>99%), 1,680 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.05, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat

#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,400 rows (>99%), 742 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,849 rows (>99%), 1,293 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,545 rows (>99%), 597 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 360,991 rows (99%), 2,151 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.81, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,453 rows (>99%), 689 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.71, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,543 rows (>99%), 599 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,607 rows (>99%), 535 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.7, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,590 rows (>99%), 1,552 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,083 rows (>99%), 59 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 2 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.36, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,363 rows (>99%), 779 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,025 rows (>99%), 117 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,240 rows (>99%), 902 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 2 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1512 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,739 rows (>99%), 403 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,481 rows (>99%), 661 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 2 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: There were 1 chains where the estimated Bayesian Fraction of Missing Information was low. See
#> http://mc-stan.org/misc/warnings.html#bfmi-low
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.81, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,080 rows (>99%), 1,062 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,367 rows (>99%), 775 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,660 rows (>99%), 482 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,157 rows (>99%), 985 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.12, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,767 rows (>99%), 1,375 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.71, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,364 rows (>99%), 778 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,994 rows (>99%), 1,148 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.06, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,892 rows (>99%), 250 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.73, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,809 rows (>99%), 1,333 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,480 rows (>99%), 1,662 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,899 rows (>99%), 243 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,529 rows (>99%), 613 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.71, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,089 rows (>99%), 1,053 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,198 rows (>99%), 944 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.86, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,689 rows (>99%), 453 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,062 rows (>99%), 80 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 90 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 769 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,144 rows (>99%), 998 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,200 rows (99%), 1,942 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,453 rows (>99%), 689 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 15 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,493 rows (>99%), 649 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 5 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,543 rows (>99%), 599 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 18 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.

#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,752 rows (>99%), 390 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 21 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,356 rows (>99%), 786 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 161 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 3000 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: There were 3 chains where the estimated Bayesian Fraction of Missing Information was low. See
#> http://mc-stan.org/misc/warnings.html#bfmi-low
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,961 rows (>99%), 181 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,957 rows (>99%), 185 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 6 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1479 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,625 rows (>99%), 1,517 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,507 rows (>99%), 1,635 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,998 rows (>99%), 144 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 962 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 468 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.78, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,151 rows (>99%), 991 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,081 rows (>99%), 1,061 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,052 rows (>99%), 1,090 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,099 rows (>99%), 1,043 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,630 rows (>99%), 512 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,795 rows (>99%), 1,347 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.34, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,149 rows (99%), 1,993 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.69, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,817 rows (>99%), 325 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,721 rows (>99%), 421 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,748 rows (>99%), 394 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,017 rows (>99%), 1,125 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,277 rows (>99%), 865 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 3000 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,032 rows (>99%), 110 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 3 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,011 rows (>99%), 131 rows remaining
#> Compiling Stan program...
#> recompiling to avoid crashing R session
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded

#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,024 rows (>99%), 118 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 6 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,124 rows (>99%), 18 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 319 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,668 rows (>99%), 474 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,877 rows (>99%), 265 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,022 rows (>99%), 120 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 36 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,073 rows (>99%), 69 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,908 rows (>99%), 234 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 2 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1498 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.3, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,881 rows (>99%), 261 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,522 rows (>99%), 620 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,017 rows (>99%), 125 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 437 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 381 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: There were 1 chains where the estimated Bayesian Fraction of Missing Information was low. See
#> http://mc-stan.org/misc/warnings.html#bfmi-low
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,786 rows (>99%), 356 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,608 rows (>99%), 534 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,088 rows (>99%), 54 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 12 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,761 rows (>99%), 381 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 357 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 3.03, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,486 rows (>99%), 656 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,365 rows (>99%), 777 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,044 rows (>99%), 98 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,096 rows (>99%), 46 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 177 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1663 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.36, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,529 rows (>99%), 613 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,247 rows (>99%), 895 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,079 rows (>99%), 63 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,944 rows (>99%), 198 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,612 rows (>99%), 530 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,377 rows (>99%), 765 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,403 rows (>99%), 739 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,692 rows (>99%), 450 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,982 rows (>99%), 160 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.38, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,993 rows (>99%), 149 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,724 rows (>99%), 418 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,650 rows (>99%), 492 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,968 rows (>99%), 174 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,079 rows (>99%), 63 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 18 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,572 rows (>99%), 570 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,203 rows (>99%), 939 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.7, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,311 rows (>99%), 831 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.71, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,314 rows (>99%), 828 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,117 rows (>99%), 1,025 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.8, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,588 rows (>99%), 554 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,214 rows (>99%), 928 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.7, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,596 rows (>99%), 546 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,858 rows (>99%), 284 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,377 rows (>99%), 765 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,881 rows (>99%), 261 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 37 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,996 rows (>99%), 146 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 844 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 2 chains where the estimated Bayesian Fraction of Missing Information was low. See
#> http://mc-stan.org/misc/warnings.html#bfmi-low
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.23, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,921 rows (>99%), 221 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 2655 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,962 rows (>99%), 180 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 189 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 2 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,818 rows (>99%), 324 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,469 rows (>99%), 673 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,464 rows (>99%), 678 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,921 rows (>99%), 221 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,728 rows (>99%), 414 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,052 rows (>99%), 90 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 2 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,985 rows (>99%), 157 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,881 rows (>99%), 261 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 394 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.91, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,795 rows (>99%), 347 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,669 rows (>99%), 473 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,849 rows (>99%), 293 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,920 rows (>99%), 222 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 386 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.92, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,871 rows (>99%), 271 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,883 rows (>99%), 259 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 398 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.92, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,800 rows (>99%), 342 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 12 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,679 rows (>99%), 463 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 231 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,900 rows (>99%), 242 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,699 rows (>99%), 443 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,644 rows (>99%), 498 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 2328 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,994 rows (>99%), 148 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,021 rows (>99%), 121 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,032 rows (>99%), 110 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 29 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,543 rows (>99%), 599 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 40 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1460 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.1, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,429 rows (>99%), 713 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,401 rows (>99%), 741 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.74, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,761 rows (>99%), 381 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,465 rows (>99%), 677 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,170 rows (>99%), 972 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,407 rows (>99%), 735 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.36, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,812 rows (>99%), 330 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,937 rows (>99%), 205 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,054 rows (>99%), 88 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 8 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,408 rows (>99%), 734 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.69, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,971 rows (>99%), 171 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,260 rows (>99%), 882 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 2717 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,053 rows (>99%), 1,089 rows remaining
#> Compiling Stan program...
#> Start sampling
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,731 rows (>99%), 411 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,810 rows (>99%), 332 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,893 rows (>99%), 249 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,007 rows (>99%), 1,135 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 2.38, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,209 rows (>99%), 933 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1507 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,753 rows (>99%), 389 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,592 rows (>99%), 550 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,796 rows (>99%), 346 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,464 rows (>99%), 678 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1488 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,704 rows (>99%), 438 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.72, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,780 rows (>99%), 362 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,486 rows (>99%), 656 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,392 rows (>99%), 750 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,040 rows (>99%), 102 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 4 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,509 rows (>99%), 633 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,083 rows (>99%), 59 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 84 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1 chains where the estimated Bayesian Fraction of Missing Information was low. See
#> http://mc-stan.org/misc/warnings.html#bfmi-low
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.34, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,547 rows (>99%), 595 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,428 rows (>99%), 714 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,463 rows (>99%), 679 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,704 rows (>99%), 438 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 2.35, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,776 rows (>99%), 366 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,056 rows (>99%), 86 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 9 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,906 rows (>99%), 236 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,794 rows (>99%), 348 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,735 rows (>99%), 407 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.05, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,576 rows (>99%), 566 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 18 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,990 rows (>99%), 152 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 2 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,811 rows (>99%), 331 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,614 rows (>99%), 528 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,833 rows (>99%), 309 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,769 rows (>99%), 373 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess

#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,771 rows (>99%), 371 rows remaining
#> Compiling Stan program...
#> recompiling to avoid crashing R session
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,498 rows (>99%), 644 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,435 rows (>99%), 707 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.16, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,878 rows (>99%), 264 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,507 rows (>99%), 635 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,674 rows (>99%), 468 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,642 rows (>99%), 500 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.72, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,898 rows (>99%), 244 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 4 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.69, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,052 rows (>99%), 90 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 22 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,777 rows (>99%), 365 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 16 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.68, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 363,107 rows (>99%), 35 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 760 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.1, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,994 rows (>99%), 148 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 51 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1375 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,631 rows (>99%), 511 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 15 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,305 rows (>99%), 837 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.72, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,477 rows (>99%), 665 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1500 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.71, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,067 rows (>99%), 1,075 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 22 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,009 rows (>99%), 1,133 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,975 rows (>99%), 1,167 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 1 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 361,722 rows (>99%), 1,420 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.06, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,603 rows (>99%), 539 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.66, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,842 rows (>99%), 300 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 157 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,904 rows (>99%), 238 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 15 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,673 rows (>99%), 469 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: There were 367 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 202 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 1.73, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,960 rows (>99%), 182 rows remaining
#> Compiling Stan program...
#> Trying to compile a simple C file
#> Running /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB foo.c
#> clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Users/maxlindmark/Library/R/4.0/library/Rcpp/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/unsupported"  -I"/Users/maxlindmark/Library/R/4.0/library/BH/include" -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/src/"  -I"/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/RcppParallel/include/"  -I"/Users/maxlindmark/Library/R/4.0/library/rstan/include" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DBOOST_NO_AUTO_PTR  -include '/Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c foo.c -o foo.o
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:88:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:1: error: unknown type name 'namespace'
#> namespace Eigen {
#> ^
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:628:16: error: expected ';' after top level declarator
#> namespace Eigen {
#>                ^
#>                ;
#> In file included from <built-in>:1:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:
#> In file included from /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Dense:1:
#> /Users/maxlindmark/Library/R/4.0/library/RcppEigen/include/Eigen/Core:96:10: fatal error: 'complex' file not found
#> #include <complex>
#>          ^~~~~~~~~
#> 3 errors generated.
#> make: *** [foo.o] Error 1
#> Start sampling
#> Warning: There were 31 divergent transitions after warmup. See
#> http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
#> to find out why this is a problem and how to eliminate them.
#> Warning: There were 1387 transitions after warmup that exceeded the maximum treedepth. Increase max_treedepth above 10. See
#> http://mc-stan.org/misc/warnings.html#maximum-treedepth-exceeded
#> Warning: Examine the pairs() plot to diagnose sampling problems
#> Warning: The largest R-hat is 2.37, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,026 rows (>99%), 1,116 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA
#> filter: removed 362,204 rows (>99%), 938 rows remaining
#> Compiling Stan program...
#> Start sampling
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> summarise: now one row and 10 columns, ungrouped
#> mutate: new variable 'max_rhat' (double) with one unique value and 0% NA

preds <- map_df(quant_list, ~as.data.frame(.x), .id = "id")

preds <- preds %>%
  separate(id, c("area", "cohort"), -5) %>% 
  mutate(cohort = as.numeric(str_remove(cohort, "_")))
#> mutate: converted 'cohort' from character to double (0 new NA)

ggplot(preds, aes(max_rhat)) + 
  geom_histogram()
#> `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.

# Filter "unfit" models
preds <- preds %>% filter(max_rhat < 1.2)
#> filter: removed 337 rows (74%), 120 rows remaining

glimpse(preds)
#> Rows: 120
#> Columns: 13
#> $ area     <chr> "BT", "BT", "BT", "BT", "BT", "BT", "BT", "BT", "BT", "BT", "…
#> $ cohort   <dbl> 1972, 1973, 1974, 1975, 1978, 1980, 1981, 1984, 1988, 1990, 1…
#> $ K_01     <dbl> 0.16181606, 0.18185407, 0.13261563, 0.04766381, 0.05226494, 0…
#> $ K_025    <dbl> 0.16790837, 0.18682294, 0.13737003, 0.05009596, 0.05559164, 0…
#> $ K_05     <dbl> 0.17471810, 0.19210747, 0.14234104, 0.05275167, 0.05977146, 0…
#> $ K_075    <dbl> 0.18178978, 0.19768087, 0.14739535, 0.05550618, 0.06415369, 0…
#> $ K_09     <dbl> 0.18782354, 0.20247908, 0.15199630, 0.05802888, 0.06858464, 0…
#> $ Linf_01  <dbl> 32.27697, 30.95910, 34.96288, 68.63983, 71.75081, 50.86882, 4…
#> $ Linf_025 <dbl> 32.85155, 31.39573, 35.65861, 71.14135, 75.84969, 52.95792, 4…
#> $ Linf_05  <dbl> 33.58896, 31.91775, 36.49526, 74.24880, 80.63988, 55.44892, 4…
#> $ Linf_075 <dbl> 34.39011, 32.42892, 37.37056, 77.53232, 85.75492, 58.21454, 4…
#> $ Linf_09  <dbl> 35.13746, 32.93959, 38.24982, 80.87107, 90.59189, 61.07799, 4…
#> $ max_rhat <dbl> 1.005, 1.021, 1.082, 1.004, 1.016, 1.007, 1.010, 1.048, 1.020…

# K
ggplot(preds, aes(cohort, K_05, color = area)) +
  geom_line()

ggplot(preds, aes(cohort, K_05, color = area)) +
  geom_line() + 
  facet_wrap(~area)

# preds %>% 
#   filter(area == "BT") %>% 
#   ggplot(aes(cohort, K_05)) +
#   geom_ribbon(aes(ymin = K_01, ymax = K_09), fill = "grey80") + 
#   geom_line()
# 
# preds %>% 
#   filter(area == "BT") %>% 
#   ggplot(aes(cohort, K_05)) +
#   geom_errorbar(aes(ymin = K_01, ymax = K_09), fill = "grey80") + 
#   geom_point()
# 
# ggplot(preds, aes(cohort, K_05)) +
#   geom_ribbon(aes(ymin = K_01, ymax = K_09), fill = "grey20") + 
#   geom_line() + 
#   facet_wrap(~area)

# L_inf
ggplot(preds, aes(cohort, Linf_05, color = area)) +
  geom_line()

ggplot(preds, aes(cohort, Linf_05, color = area)) +
  geom_line() + 
  facet_wrap(~area)

Check problematic cohorts and areas, run separate fits to those

preds %>% filter(max_rhat > 4)
#> filter: removed all rows (100%)

# BT   1971 looks problematic
  
  dd <- filter(d, area == "BT", cohort == 1971)
#> filter: removed 363,047 rows (>99%), 95 rows remaining
  
  ggplot(dd, aes(age_bc, length_cm, color = ID)) + 
    geom_point() +
    geom_line() + 
    scale_color_viridis(discrete = TRUE)

  
  m <- 
    brm(
      bf(length_cm ~ Linf*(1-exp(-K*(age_bc-t0))),
         t0 ~ 1,
         K ~ 1 + (1|ID),  
         Linf ~ 1,
         nl = TRUE), 
      data = dd,
      family = gaussian(),
      prior = c(prior(normal(45, 20), nlpar = "Linf"),
                prior(normal(-0.5, 1), nlpar = "t0"),
                prior(normal(0.2, 0.1), nlpar = "K")),
      iter = 3000,
      thin = 1,
      cores = 3,
      chains = 3,
      seed = 9)
#> Compiling Stan program...
#> Start sampling
#> Warning: The largest R-hat is 1.67, indicating chains have not mixed.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#r-hat
#> Warning: Bulk Effective Samples Size (ESS) is too low, indicating posterior means and medians may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#bulk-ess
#> Warning: Tail Effective Samples Size (ESS) is too low, indicating posterior variances and tail quantiles may be unreliable.
#> Running the chains for more iterations may help. See
#> http://mc-stan.org/misc/warnings.html#tail-ess
  
rhat(m)
#>                 b_t0_Intercept                  b_K_Intercept 
#>                       6.299701                       6.379637 
#>               b_Linf_Intercept             sd_ID__K_Intercept 
#>                       7.084453                       1.983392 
#>                          sigma r_ID__K[1977_123_BT,Intercept] 
#>                       3.025837                       2.002740 
#> r_ID__K[1977_145_BT,Intercept] r_ID__K[1977_152_BT,Intercept] 
#>                       1.064385                       1.191307 
#>  r_ID__K[1977_90_BT,Intercept]  r_ID__K[1977_98_BT,Intercept] 
#>                       1.826052                       1.696548 
#> r_ID__K[1978_152_BT,Intercept] r_ID__K[1978_153_BT,Intercept] 
#>                       2.270501                       1.021973 
#> r_ID__K[1978_155_BT,Intercept] r_ID__K[1978_248_BT,Intercept] 
#>                       1.741322                       1.010553 
#> r_ID__K[1978_313_BT,Intercept]  r_ID__K[1978_53_BT,Intercept] 
#>                       1.339868                       1.000945 
#>  r_ID__K[1978_83_BT,Intercept] r_ID__K[1979_129_BT,Intercept] 
#>                       1.706484                       1.205390 
#> r_ID__K[1979_144_BT,Intercept]                         lprior 
#>                       1.983721                       7.116406 
#>                           lp__ 
#>                       6.719984
  
summary(m)
#> Warning: Parts of the model have not converged (some Rhats are > 1.05). Be
#> careful when analysing the results! We recommend running more iterations and/or
#> setting stronger priors.
#>  Family: gaussian 
#>   Links: mu = identity; sigma = identity 
#> Formula: length_cm ~ Linf * (1 - exp(-K * (age_bc - t0))) 
#>          t0 ~ 1
#>          K ~ 1 + (1 | ID)
#>          Linf ~ 1
#>    Data: dd (Number of observations: 95) 
#>   Draws: 3 chains, each with iter = 3000; warmup = 1500; thin = 1;
#>          total post-warmup draws = 4500
#> 
#> Group-Level Effects: 
#> ~ID (Number of levels: 14) 
#>                 Estimate Est.Error l-95% CI u-95% CI Rhat Bulk_ESS Tail_ESS
#> sd(K_Intercept)     0.01      0.01     0.00     0.03 1.67        5       33
#> 
#> Population-Level Effects: 
#>                Estimate Est.Error l-95% CI u-95% CI Rhat Bulk_ESS Tail_ESS
#> t0_Intercept      -0.80      0.97    -2.55     0.06 1.66        5       35
#> K_Intercept        0.09      0.10    -0.06     0.20 1.66        5       35
#> Linf_Intercept     9.64     39.59   -60.64    42.28 1.66        5       44
#> 
#> Family Specific Parameters: 
#>       Estimate Est.Error l-95% CI u-95% CI Rhat Bulk_ESS Tail_ESS
#> sigma     1.27      0.30     0.94     1.87 1.66        5       35
#> 
#> Draws were sampled using sampling(NUTS). For each parameter, Bulk_ESS
#> and Tail_ESS are effective sample size measures, and Rhat is the potential
#> scale reduction factor on split chains (at convergence, Rhat = 1).

plot(m)